Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 FAM86GP-201ENST00000448322 971 ntBASIC16.68■□□□□ 0.26
COL28A1Q2UY09 GAPDHP21-201ENST00000450301 1010 ntBASIC16.68■□□□□ 0.26
COL28A1Q2UY09 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 AC093214.1-201ENST00000511688 1107 ntBASIC16.68■□□□□ 0.26
COL28A1Q2UY09 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 AC004835.2-201ENST00000603762 682 ntBASIC16.68■□□□□ 0.26
COL28A1Q2UY09 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 AL024508.2-201ENST00000607749 1894 ntBASIC16.67■□□□□ 0.26
COL28A1Q2UY09 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 AC022494.1-201ENST00000466044 728 ntBASIC16.67■□□□□ 0.26
COL28A1Q2UY09 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.67■□□□□ 0.26
COL28A1Q2UY09 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 AC135776.1-201ENST00000319817 2481 ntBASIC16.66■□□□□ 0.26
COL28A1Q2UY09 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 VN2R19P-201ENST00000442399 1052 ntBASIC16.66■□□□□ 0.26
COL28A1Q2UY09 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 TERF1P3-201ENST00000505638 1227 ntBASIC16.66■□□□□ 0.26
COL28A1Q2UY09 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 LINC01126-201ENST00000623515 1646 ntBASIC16.66■□□□□ 0.26
COL28A1Q2UY09 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL28A1Q2UY09 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms