Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
CTCFP49711 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.99■□□□□ 0.79
CTCFP49711 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.99■□□□□ 0.79
CTCFP49711 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.99■□□□□ 0.79
CTCFP49711 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.99■□□□□ 0.79
CTCFP49711 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CTCFP49711 RPL28-206ENST00000558752 671 ntTSL 3 BASIC19.99■□□□□ 0.79
CTCFP49711 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
CTCFP49711 AC073592.8-201ENST00000624126 511 ntBASIC19.99■□□□□ 0.79
CTCFP49711 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC19.99■□□□□ 0.79
CTCFP49711 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CTCFP49711 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.98■□□□□ 0.79
CTCFP49711 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.98■□□□□ 0.79
CTCFP49711 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 AC097637.2-201ENST00000624096 1997 ntBASIC19.98■□□□□ 0.79
CTCFP49711 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CTCFP49711 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 AC011495.1-201ENST00000498085 584 ntBASIC19.98■□□□□ 0.79
CTCFP49711 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.98■□□□□ 0.79
CTCFP49711 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 AC132938.2-201ENST00000579188 680 ntBASIC19.98■□□□□ 0.79
CTCFP49711 AL591163.1-201ENST00000641757 987 ntBASIC19.98■□□□□ 0.79
CTCFP49711 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
CTCFP49711 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CTCFP49711 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CTCFP49711 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
CTCFP49711 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 AC007541.1-201ENST00000570282 1469 ntBASIC19.98■□□□□ 0.79
CTCFP49711 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CTCFP49711 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CTCFP49711 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CTCFP49711 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.97■□□□□ 0.79
CTCFP49711 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.97■□□□□ 0.79
CTCFP49711 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC19.97■□□□□ 0.79
CTCFP49711 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.97■□□□□ 0.79
CTCFP49711 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC19.97■□□□□ 0.79
CTCFP49711 API5-211ENST00000534695 560 ntTSL 5 BASIC19.97■□□□□ 0.79
CTCFP49711 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 AC104794.3-201ENST00000566840 1248 ntBASIC19.97■□□□□ 0.79
CTCFP49711 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC19.97■□□□□ 0.79
CTCFP49711 MIR4538-201ENST00000581377 78 ntBASIC19.97■□□□□ 0.79
CTCFP49711 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CTCFP49711 GPR182-203ENST00000622922 591 ntBASIC19.97■□□□□ 0.79
CTCFP49711 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
CTCFP49711 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.97■□□□□ 0.79
CTCFP49711 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.97■□□□□ 0.79
CTCFP49711 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.97■□□□□ 0.79
CTCFP49711 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CTCFP49711 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CTCFP49711 AL049757.1-201ENST00000616842 1596 ntBASIC19.96■□□□□ 0.79
CTCFP49711 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.96■□□□□ 0.79
CTCFP49711 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.96■□□□□ 0.79
CTCFP49711 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CTCFP49711 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.96■□□□□ 0.79
CTCFP49711 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 LINC01225-203ENST00000563550 1244 ntBASIC19.96■□□□□ 0.79
CTCFP49711 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.96■□□□□ 0.79
CTCFP49711 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.96■□□□□ 0.79
CTCFP49711 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC19.96■□□□□ 0.79
CTCFP49711 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 AC003101.2-201ENST00000612557 442 ntBASIC19.96■□□□□ 0.79
CTCFP49711 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC19.96■□□□□ 0.79
CTCFP49711 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTCFP49711 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms