Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 KRT89P-201ENST00000620027 1478 ntBASIC14.24□□□□□ -0.13
CDX1P47902 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CDX1P47902 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.24□□□□□ -0.13
CDX1P47902 PKD1P5-201ENST00000532415 10291 ntBASIC14.24□□□□□ -0.13
CDX1P47902 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.24□□□□□ -0.13
CDX1P47902 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CDX1P47902 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CDX1P47902 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 OR6D1P-203ENST00000641209 4860 ntBASIC14.23□□□□□ -0.13
CDX1P47902 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.23□□□□□ -0.13
CDX1P47902 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CDX1P47902 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.23□□□□□ -0.13
CDX1P47902 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.23□□□□□ -0.13
CDX1P47902 ATP5G2P1-201ENST00000433580 426 ntBASIC14.23□□□□□ -0.13
CDX1P47902 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.23□□□□□ -0.13
CDX1P47902 AP003733.1-201ENST00000491725 852 ntBASIC14.23□□□□□ -0.13
CDX1P47902 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC14.23□□□□□ -0.13
CDX1P47902 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.23□□□□□ -0.13
CDX1P47902 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC14.23□□□□□ -0.13
CDX1P47902 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.23□□□□□ -0.13
CDX1P47902 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.23□□□□□ -0.13
CDX1P47902 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.23□□□□□ -0.13
CDX1P47902 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.23□□□□□ -0.13
CDX1P47902 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CDX1P47902 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CDX1P47902 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.23□□□□□ -0.13
CDX1P47902 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDX1P47902 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 PCDHA14-201ENST00000506751 2298 ntBASIC14.22□□□□□ -0.13
CDX1P47902 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CDX1P47902 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
CDX1P47902 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.22□□□□□ -0.13
CDX1P47902 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.22□□□□□ -0.13
CDX1P47902 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.22□□□□□ -0.13
CDX1P47902 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
CDX1P47902 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.22□□□□□ -0.13
CDX1P47902 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.22□□□□□ -0.13
CDX1P47902 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 AC009102.3-201ENST00000623118 1491 ntBASIC14.22□□□□□ -0.13
CDX1P47902 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
CDX1P47902 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
CDX1P47902 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms