Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.01■□□□□ 0.47
PTPN9P43378 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
PTPN9P43378 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PTPN9P43378 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
PTPN9P43378 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.01■□□□□ 0.47
PTPN9P43378 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 AC124947.2-201ENST00000547118 1133 ntBASIC18.01■□□□□ 0.47
PTPN9P43378 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PTPN9P43378 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 AL353135.1-201ENST00000606729 504 ntBASIC18.01■□□□□ 0.47
PTPN9P43378 AL589182.2-201ENST00000619332 1049 ntBASIC18.01■□□□□ 0.47
PTPN9P43378 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.01■□□□□ 0.47
PTPN9P43378 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.01■□□□□ 0.47
PTPN9P43378 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.01■□□□□ 0.47
PTPN9P43378 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN9P43378 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
PTPN9P43378 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
PTPN9P43378 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18■□□□□ 0.47
PTPN9P43378 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18■□□□□ 0.47
PTPN9P43378 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18■□□□□ 0.47
PTPN9P43378 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18■□□□□ 0.47
PTPN9P43378 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
PTPN9P43378 MTDHP4-201ENST00000600287 670 ntBASIC18■□□□□ 0.47
PTPN9P43378 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 GPR89P-201ENST00000407924 1495 ntBASIC18■□□□□ 0.47
PTPN9P43378 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18■□□□□ 0.47
PTPN9P43378 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTPN9P43378 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.99■□□□□ 0.47
PTPN9P43378 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 AL450487.1-201ENST00000426799 995 ntBASIC17.99■□□□□ 0.47
PTPN9P43378 EMBP1-201ENST00000458200 901 ntBASIC17.99■□□□□ 0.47
PTPN9P43378 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.99■□□□□ 0.47
PTPN9P43378 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.99■□□□□ 0.47
PTPN9P43378 AC064862.7-201ENST00000604520 867 ntBASIC17.99■□□□□ 0.47
PTPN9P43378 AC025062.2-201ENST00000605477 670 ntBASIC17.99■□□□□ 0.47
PTPN9P43378 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.99■□□□□ 0.47
PTPN9P43378 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
PTPN9P43378 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
PTPN9P43378 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.99■□□□□ 0.47
PTPN9P43378 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.99■□□□□ 0.47
PTPN9P43378 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.99■□□□□ 0.47
PTPN9P43378 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN9P43378 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.98■□□□□ 0.47
PTPN9P43378 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.98■□□□□ 0.47
PTPN9P43378 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms