Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN9O95484 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CLDN9O95484 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CLDN9O95484 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 NKILA-202ENST00000614771 2598 ntBASIC16.8■□□□□ 0.28
CLDN9O95484 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 AC003669.1-201ENST00000334569 611 ntBASIC16.8■□□□□ 0.28
CLDN9O95484 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.8■□□□□ 0.28
CLDN9O95484 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.8■□□□□ 0.28
CLDN9O95484 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.8■□□□□ 0.28
CLDN9O95484 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN9O95484 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.8■□□□□ 0.28
CLDN9O95484 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.8■□□□□ 0.28
CLDN9O95484 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN9O95484 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CLDN9O95484 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 AC009336.1-201ENST00000608941 1553 ntBASIC16.8■□□□□ 0.28
CLDN9O95484 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 NSUN5P1-202ENST00000421140 1535 ntBASIC16.8■□□□□ 0.28
CLDN9O95484 NSUN5P2-203ENST00000457352 1529 ntBASIC16.8■□□□□ 0.28
CLDN9O95484 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN9O95484 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN9O95484 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLDN9O95484 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.79■□□□□ 0.28
CLDN9O95484 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CLDN9O95484 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CLDN9O95484 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.79■□□□□ 0.28
CLDN9O95484 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.79■□□□□ 0.28
CLDN9O95484 LINC00265-3P-201ENST00000447588 903 ntBASIC16.79■□□□□ 0.28
CLDN9O95484 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.79■□□□□ 0.28
CLDN9O95484 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.79■□□□□ 0.28
CLDN9O95484 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CLDN9O95484 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.79■□□□□ 0.28
CLDN9O95484 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.79■□□□□ 0.28
CLDN9O95484 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN9O95484 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.78■□□□□ 0.28
CLDN9O95484 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CLDN9O95484 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CLDN9O95484 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.78■□□□□ 0.28
CLDN9O95484 AC132938.5-201ENST00000624980 1813 ntBASIC16.78■□□□□ 0.28
CLDN9O95484 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.78■□□□□ 0.28
CLDN9O95484 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CLDN9O95484 IGHV3-47-201ENST00000425060 335 ntBASIC16.78■□□□□ 0.28
CLDN9O95484 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.78■□□□□ 0.28
CLDN9O95484 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.78■□□□□ 0.28
CLDN9O95484 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.78■□□□□ 0.28
CLDN9O95484 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.78■□□□□ 0.28
CLDN9O95484 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.78■□□□□ 0.28
CLDN9O95484 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CLDN9O95484 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CLDN9O95484 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 AC011676.5-201ENST00000624864 2660 ntBASIC16.78■□□□□ 0.28
CLDN9O95484 INTS4P1-201ENST00000438455 1935 ntBASIC16.78■□□□□ 0.28
CLDN9O95484 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN9O95484 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CLDN9O95484 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms