Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 AC139713.2-201ENST00000641328 2723 ntBASIC17.47■□□□□ 0.39
LHX3Q9UBR4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LHX3Q9UBR4 AC093525.9-201ENST00000624961 1746 ntBASIC17.47■□□□□ 0.39
LHX3Q9UBR4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 AP000347.1-202ENST00000435868 847 ntBASIC17.46■□□□□ 0.39
LHX3Q9UBR4 RNA5SP415-201ENST00000517246 115 ntBASIC17.46■□□□□ 0.39
LHX3Q9UBR4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LHX3Q9UBR4 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
LHX3Q9UBR4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LHX3Q9UBR4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.38
LHX3Q9UBR4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.46■□□□□ 0.38
LHX3Q9UBR4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
LHX3Q9UBR4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 UNC93B6-202ENST00000528242 690 ntBASIC17.45■□□□□ 0.38
LHX3Q9UBR4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 AC005593.1-201ENST00000624894 515 ntBASIC17.45■□□□□ 0.38
LHX3Q9UBR4 PGM5P2-202ENST00000637225 1043 ntBASIC17.45■□□□□ 0.38
LHX3Q9UBR4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX3Q9UBR4 EGFEM1P-202ENST00000431685 1563 ntBASIC17.45■□□□□ 0.38
LHX3Q9UBR4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.44■□□□□ 0.38
LHX3Q9UBR4 AP002414.1-201ENST00000391405 1147 ntBASIC17.44■□□□□ 0.38
LHX3Q9UBR4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms