Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 AC004233.3-201ENST00000607794 1269 ntBASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 AC073592.8-201ENST00000624126 511 ntBASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 AC022144.1-201ENST00000602255 1580 ntBASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF541Q9H0D2 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 CU639417.3-201ENST00000624240 1404 ntBASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 IGHV3-71-201ENST00000523324 359 ntBASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 AC027369.6-201ENST00000525520 931 ntBASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 AC109635.5-201ENST00000533593 962 ntBASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 SPDYE12P-201ENST00000618416 771 ntBASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 WASH6P-202ENST00000359512 1437 ntBASIC20.59■□□□□ 0.89
ZNF541Q9H0D2 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AC010336.2-201ENST00000564226 506 ntBASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AC027307.2-201ENST00000591252 911 ntBASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AC008267.7-201ENST00000624570 1194 ntBASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 AC135776.1-201ENST00000319817 2481 ntBASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ZNF541Q9H0D2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.58■□□□□ 0.88
ZNF541Q9H0D2 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.58■□□□□ 0.88
ZNF541Q9H0D2 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 AP000997.3-201ENST00000623333 2250 ntBASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 MIR346-201ENST00000362234 95 ntBASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 HILS1-202ENST00000545329 423 ntBASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms