Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS33AQ96AX1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 HLA-F-220ENST00000434407 884 ntBASIC16.73■□□□□ 0.27
VPS33AQ96AX1 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 AC140113.3-201ENST00000605663 199 ntBASIC16.73■□□□□ 0.27
VPS33AQ96AX1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.73■□□□□ 0.27
VPS33AQ96AX1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VPS33AQ96AX1 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 SPDYE15P-201ENST00000424157 909 ntBASIC16.72■□□□□ 0.27
VPS33AQ96AX1 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 AL441883.1-201ENST00000566170 1045 ntBASIC16.72■□□□□ 0.27
VPS33AQ96AX1 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS33AQ96AX1 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS33AQ96AX1 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms