Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 RNF216P1-203ENST00000404404 2427 ntBASIC19.74■□□□□ 0.75
ERCC4Q92889 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.74■□□□□ 0.75
ERCC4Q92889 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
ERCC4Q92889 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.74■□□□□ 0.75
ERCC4Q92889 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.74■□□□□ 0.75
ERCC4Q92889 SLC25A1P3-201ENST00000395415 828 ntBASIC19.74■□□□□ 0.75
ERCC4Q92889 FAM8A6P-201ENST00000407496 1135 ntBASIC19.74■□□□□ 0.75
ERCC4Q92889 AC211429.1-201ENST00000415277 523 ntBASIC19.74■□□□□ 0.75
ERCC4Q92889 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.74■□□□□ 0.75
ERCC4Q92889 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.74■□□□□ 0.75
ERCC4Q92889 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
ERCC4Q92889 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 LINC01311-201ENST00000565162 1445 ntBASIC19.74■□□□□ 0.75
ERCC4Q92889 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 Z83836.1-201ENST00000624605 1642 ntBASIC19.73■□□□□ 0.75
ERCC4Q92889 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ERCC4Q92889 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 TSPY5P-201ENST00000426936 936 ntBASIC19.73■□□□□ 0.75
ERCC4Q92889 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.73■□□□□ 0.75
ERCC4Q92889 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.73■□□□□ 0.75
ERCC4Q92889 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.73■□□□□ 0.75
ERCC4Q92889 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.73■□□□□ 0.75
ERCC4Q92889 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.73■□□□□ 0.75
ERCC4Q92889 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.73■□□□□ 0.75
ERCC4Q92889 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.73■□□□□ 0.75
ERCC4Q92889 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.73■□□□□ 0.75
ERCC4Q92889 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.73■□□□□ 0.75
ERCC4Q92889 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.73■□□□□ 0.75
ERCC4Q92889 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.73■□□□□ 0.75
ERCC4Q92889 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
ERCC4Q92889 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
ERCC4Q92889 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
ERCC4Q92889 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
ERCC4Q92889 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.72■□□□□ 0.75
ERCC4Q92889 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
ERCC4Q92889 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.72■□□□□ 0.75
ERCC4Q92889 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
ERCC4Q92889 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
ERCC4Q92889 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.72■□□□□ 0.75
ERCC4Q92889 LINC01023-201ENST00000606054 436 ntBASIC19.72■□□□□ 0.75
ERCC4Q92889 AL390719.2-201ENST00000606993 987 ntBASIC19.72■□□□□ 0.75
ERCC4Q92889 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
ERCC4Q92889 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.72■□□□□ 0.75
ERCC4Q92889 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.72■□□□□ 0.75
ERCC4Q92889 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
ERCC4Q92889 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ERCC4Q92889 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ERCC4Q92889 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ERCC4Q92889 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms