Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 SPDYE21P-201ENST00000413323 827 ntBASIC19.4■□□□□ 0.7
USP38Q8NB14 AC254562.1-201ENST00000417586 456 ntBASIC19.4■□□□□ 0.7
USP38Q8NB14 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 BX005266.1-201ENST00000473402 457 ntBASIC19.4■□□□□ 0.7
USP38Q8NB14 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.4■□□□□ 0.7
USP38Q8NB14 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.4■□□□□ 0.7
USP38Q8NB14 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.4■□□□□ 0.7
USP38Q8NB14 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.4■□□□□ 0.7
USP38Q8NB14 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 FLJ13224-201ENST00000313737 1514 ntBASIC19.4■□□□□ 0.7
USP38Q8NB14 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.4■□□□□ 0.7
USP38Q8NB14 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP38Q8NB14 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP38Q8NB14 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP38Q8NB14 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.39■□□□□ 0.7
USP38Q8NB14 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.39■□□□□ 0.7
USP38Q8NB14 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.39■□□□□ 0.7
USP38Q8NB14 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
USP38Q8NB14 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.39■□□□□ 0.7
USP38Q8NB14 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
USP38Q8NB14 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
USP38Q8NB14 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.39■□□□□ 0.69
USP38Q8NB14 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP38Q8NB14 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.39■□□□□ 0.69
USP38Q8NB14 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.39■□□□□ 0.69
USP38Q8NB14 KRT18P27-201ENST00000427733 1299 ntBASIC19.39■□□□□ 0.69
USP38Q8NB14 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.39■□□□□ 0.69
USP38Q8NB14 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.39■□□□□ 0.69
USP38Q8NB14 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.39■□□□□ 0.69
USP38Q8NB14 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.39■□□□□ 0.69
USP38Q8NB14 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.39■□□□□ 0.69
USP38Q8NB14 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.39■□□□□ 0.69
USP38Q8NB14 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.39■□□□□ 0.69
USP38Q8NB14 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.39■□□□□ 0.69
USP38Q8NB14 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.39■□□□□ 0.69
USP38Q8NB14 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.39■□□□□ 0.69
USP38Q8NB14 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP38Q8NB14 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
USP38Q8NB14 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
USP38Q8NB14 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 CNN2P11-201ENST00000429351 262 ntBASIC19.38■□□□□ 0.69
USP38Q8NB14 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.38■□□□□ 0.69
USP38Q8NB14 AC009947.1-201ENST00000444350 727 ntBASIC19.38■□□□□ 0.69
USP38Q8NB14 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.38■□□□□ 0.69
USP38Q8NB14 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.38■□□□□ 0.69
USP38Q8NB14 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
USP38Q8NB14 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.38■□□□□ 0.69
USP38Q8NB14 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.38■□□□□ 0.69
USP38Q8NB14 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
USP38Q8NB14 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
USP38Q8NB14 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.38■□□□□ 0.69
USP38Q8NB14 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP38Q8NB14 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.37■□□□□ 0.69
USP38Q8NB14 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP38Q8NB14 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP38Q8NB14 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP38Q8NB14 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP38Q8NB14 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.37■□□□□ 0.69
USP38Q8NB14 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP38Q8NB14 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
USP38Q8NB14 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.37■□□□□ 0.69
USP38Q8NB14 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP38Q8NB14 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP38Q8NB14 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
USP38Q8NB14 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms