Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 SLC47A1P1-202ENST00000449666 945 ntBASIC10.82□□□□□ -0.68
LINC00643Q86TS7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 AC074183.2-201ENST00000623112 922 ntBASIC10.81□□□□□ -0.68
LINC00643Q86TS7 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 KRT8P8-201ENST00000434750 1448 ntBASIC10.81□□□□□ -0.68
LINC00643Q86TS7 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 AC007686.3-201ENST00000619017 3487 ntBASIC10.81□□□□□ -0.68
LINC00643Q86TS7 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
LINC00643Q86TS7 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 HARS-204ENST00000438307 1789 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms