Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 AC017083.2-201ENST00000608069 979 ntBASIC18.19■□□□□ 0.5
CHD9Q3L8U1 AL161645.1-201ENST00000622716 1255 ntBASIC18.19■□□□□ 0.5
CHD9Q3L8U1 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AC119751.2-201ENST00000504529 210 ntBASIC18.18■□□□□ 0.5
CHD9Q3L8U1 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AC004233.3-201ENST00000607794 1269 ntBASIC18.18■□□□□ 0.5
CHD9Q3L8U1 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 SPDYE12P-201ENST00000618416 771 ntBASIC18.18■□□□□ 0.5
CHD9Q3L8U1 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AC046185.3-201ENST00000623228 1824 ntBASIC18.18■□□□□ 0.5
CHD9Q3L8U1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AC132938.2-201ENST00000579188 680 ntBASIC18.18■□□□□ 0.5
CHD9Q3L8U1 MIR4525-201ENST00000580000 75 ntBASIC18.18■□□□□ 0.5
CHD9Q3L8U1 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AL591163.1-201ENST00000641757 987 ntBASIC18.18■□□□□ 0.5
CHD9Q3L8U1 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHD9Q3L8U1 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 KRT17P7-201ENST00000451704 1104 ntBASIC18.17■□□□□ 0.5
CHD9Q3L8U1 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CHD9Q3L8U1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 MIR658-201ENST00000385210 100 ntBASIC18.16■□□□□ 0.5
CHD9Q3L8U1 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 AC140912.1-201ENST00000577171 1054 ntBASIC18.16■□□□□ 0.5
CHD9Q3L8U1 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.16■□□□□ 0.5
CHD9Q3L8U1 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 IGHV3-52-201ENST00000519770 353 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms