Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 EMD-201ENST00000369835 966 ntTSL 3 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 PKD1P1-201ENST00000458669 6805 ntBASIC17■□□□□ 0.31
PTCHD3Q3KNS1 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 AC016396.2-201ENST00000562575 1417 ntBASIC17■□□□□ 0.31
PTCHD3Q3KNS1 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD3Q3KNS1 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 MRPL3P1-201ENST00000400109 1033 ntBASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 AC132008.2-207ENST00000454517 770 ntBASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 INTS4P1-201ENST00000438455 1935 ntBASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 AP001094.4-201ENST00000579008 2176 ntBASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 AL353593.2-201ENST00000602529 1483 ntBASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.99■□□□□ 0.31
PTCHD3Q3KNS1 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 AC079776.4-201ENST00000511039 504 ntBASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 SLC25A6P4-201ENST00000586535 553 ntBASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms