Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.48□□□□□ -0.09
HOXA1P49639 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 RPS2P55-201ENST00000397318 883 ntBASIC14.48□□□□□ -0.09
HOXA1P49639 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 AC107956.1-201ENST00000494359 873 ntBASIC14.48□□□□□ -0.09
HOXA1P49639 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC14.48□□□□□ -0.09
HOXA1P49639 AC142381.4-202ENST00000563973 229 ntBASIC14.48□□□□□ -0.09
HOXA1P49639 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC14.48□□□□□ -0.09
HOXA1P49639 AP005242.2-201ENST00000580065 1175 ntBASIC14.48□□□□□ -0.09
HOXA1P49639 AC113410.3-201ENST00000623366 203 ntBASIC14.48□□□□□ -0.09
HOXA1P49639 AC063926.3-201ENST00000624734 5658 ntBASIC14.48□□□□□ -0.09
HOXA1P49639 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 AL122018.1-201ENST00000446607 2310 ntBASIC14.48□□□□□ -0.09
HOXA1P49639 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
HOXA1P49639 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
HOXA1P49639 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.48□□□□□ -0.09
HOXA1P49639 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.48□□□□□ -0.09
HOXA1P49639 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.47□□□□□ -0.09
HOXA1P49639 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 AC012618.2-201ENST00000428058 849 ntBASIC14.47□□□□□ -0.09
HOXA1P49639 SLC25A1P2-201ENST00000430693 912 ntBASIC14.47□□□□□ -0.09
HOXA1P49639 AL158047.1-201ENST00000445918 881 ntBASIC14.47□□□□□ -0.09
HOXA1P49639 CCR12P-201ENST00000446203 998 ntBASIC14.47□□□□□ -0.09
HOXA1P49639 TSPY17P-201ENST00000450329 467 ntBASIC14.47□□□□□ -0.09
HOXA1P49639 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC14.47□□□□□ -0.09
HOXA1P49639 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 AC026471.5-201ENST00000615068 467 ntBASIC14.47□□□□□ -0.09
HOXA1P49639 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.47□□□□□ -0.09
HOXA1P49639 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HOXA1P49639 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HOXA1P49639 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
HOXA1P49639 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXA1P49639 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.46□□□□□ -0.09
HOXA1P49639 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 AL024508.2-201ENST00000607749 1894 ntBASIC14.46□□□□□ -0.09
HOXA1P49639 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXA1P49639 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
HOXA1P49639 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
HOXA1P49639 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
HOXA1P49639 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXA1P49639 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
HOXA1P49639 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXA1P49639 WWOX-216ENST00000569818 525 ntBASIC14.46□□□□□ -0.09
HOXA1P49639 AL049637.2-201ENST00000641778 930 ntBASIC14.46□□□□□ -0.09
HOXA1P49639 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
HOXA1P49639 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXA1P49639 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
HOXA1P49639 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14.46□□□□□ -0.09
HOXA1P49639 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.46□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms