Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.28■□□□□ 0.84
SCN4AP35499 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCN4AP35499 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SCN4AP35499 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCN4AP35499 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.28■□□□□ 0.84
SCN4AP35499 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCN4AP35499 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.28■□□□□ 0.84
SCN4AP35499 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SCN4AP35499 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN4AP35499 AL020996.1-203ENST00000536896 2307 ntBASIC20.27■□□□□ 0.84
SCN4AP35499 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SCN4AP35499 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN4AP35499 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN4AP35499 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.27■□□□□ 0.84
SCN4AP35499 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.27■□□□□ 0.84
SCN4AP35499 AC004790.1-201ENST00000612686 536 ntBASIC20.27■□□□□ 0.84
SCN4AP35499 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SCN4AP35499 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SCN4AP35499 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SCN4AP35499 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 RN7SL837P-201ENST00000463010 287 ntBASIC20.27■□□□□ 0.84
SCN4AP35499 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN4AP35499 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN4AP35499 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN4AP35499 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.27■□□□□ 0.84
SCN4AP35499 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SCN4AP35499 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SCN4AP35499 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SCN4AP35499 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SCN4AP35499 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.26■□□□□ 0.83
SCN4AP35499 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SCN4AP35499 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.26■□□□□ 0.83
SCN4AP35499 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
SCN4AP35499 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN4AP35499 MIR4525-201ENST00000580000 75 ntBASIC20.26■□□□□ 0.83
SCN4AP35499 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN4AP35499 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN4AP35499 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 AC016027.1-202ENST00000607927 1699 ntBASIC20.26■□□□□ 0.83
SCN4AP35499 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN4AP35499 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
SCN4AP35499 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 KRT17P8-201ENST00000540749 863 ntBASIC20.25■□□□□ 0.83
SCN4AP35499 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 AC003101.2-201ENST00000612557 442 ntBASIC20.25■□□□□ 0.83
SCN4AP35499 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.25■□□□□ 0.83
SCN4AP35499 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SCN4AP35499 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.25■□□□□ 0.83
SCN4AP35499 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 FOXO1B-201ENST00000504678 1527 ntBASIC20.25■□□□□ 0.83
SCN4AP35499 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SCN4AP35499 DFFBP1-201ENST00000433250 979 ntBASIC20.25■□□□□ 0.83
SCN4AP35499 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.25■□□□□ 0.83
SCN4AP35499 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 ZNF890P-202ENST00000530367 1156 ntBASIC20.25■□□□□ 0.83
SCN4AP35499 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.25■□□□□ 0.83
SCN4AP35499 RAB43P1-201ENST00000561790 589 ntBASIC20.25■□□□□ 0.83
SCN4AP35499 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.25■□□□□ 0.83
SCN4AP35499 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.25■□□□□ 0.83
SCN4AP35499 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN4AP35499 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
SCN4AP35499 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.24■□□□□ 0.83
SCN4AP35499 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.24■□□□□ 0.83
SCN4AP35499 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.24■□□□□ 0.83
SCN4AP35499 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
SCN4AP35499 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.24■□□□□ 0.83
SCN4AP35499 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.24■□□□□ 0.83
SCN4AP35499 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.24■□□□□ 0.83
SCN4AP35499 AC009407.1-201ENST00000568958 598 ntBASIC20.24■□□□□ 0.83
SCN4AP35499 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms