Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 CES3-203ENST00000543856 3178 ntTSL 2 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 AC005104.2-201ENST00000427818 678 ntBASIC13.28□□□□□ -0.28
HLA-DMBP28068 FAM86EP-206ENST00000510506 987 ntBASIC13.28□□□□□ -0.28
HLA-DMBP28068 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 GXYLT1P4-201ENST00000613576 1192 ntBASIC13.28□□□□□ -0.28
HLA-DMBP28068 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 AC010460.3-201ENST00000511359 1579 ntBASIC13.28□□□□□ -0.28
HLA-DMBP28068 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.28□□□□□ -0.28
HLA-DMBP28068 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC13.28□□□□□ -0.28
HLA-DMBP28068 Z83836.1-201ENST00000624605 1642 ntBASIC13.28□□□□□ -0.28
HLA-DMBP28068 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 TNRC18P3-201ENST00000441896 2691 ntBASIC13.27□□□□□ -0.28
HLA-DMBP28068 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DMBP28068 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DMBP28068 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.27□□□□□ -0.28
HLA-DMBP28068 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
HLA-DMBP28068 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.27□□□□□ -0.28
HLA-DMBP28068 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC13.27□□□□□ -0.28
HLA-DMBP28068 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 DDT-203ENST00000403754 569 ntTSL 3 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 DDT-206ENST00000430101 573 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 AL390719.2-201ENST00000606993 987 ntBASIC13.27□□□□□ -0.29
HLA-DMBP28068 HYMAI.1-201ENST00000620949 238 ntBASIC13.27□□□□□ -0.29
HLA-DMBP28068 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 PC-208ENST00000529047 1607 ntTSL 3 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DMBP28068 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DMBP28068 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms