Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.76■□□□□ 0.43
COL9A1P20849 AL591163.1-201ENST00000641757 987 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 AP000974.1-201ENST00000623909 2387 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.76■□□□□ 0.43
COL9A1P20849 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL9A1P20849 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.75■□□□□ 0.43
COL9A1P20849 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.75■□□□□ 0.43
COL9A1P20849 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.75■□□□□ 0.43
COL9A1P20849 ACTBP11-201ENST00000436287 1126 ntBASIC17.75■□□□□ 0.43
COL9A1P20849 SPTLC1P1-201ENST00000447199 261 ntBASIC17.75■□□□□ 0.43
COL9A1P20849 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.75■□□□□ 0.43
COL9A1P20849 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.75■□□□□ 0.43
COL9A1P20849 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.75■□□□□ 0.43
COL9A1P20849 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.75■□□□□ 0.43
COL9A1P20849 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL9A1P20849 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL9A1P20849 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.74■□□□□ 0.43
COL9A1P20849 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.74■□□□□ 0.43
COL9A1P20849 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.74■□□□□ 0.43
COL9A1P20849 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 KLF4P1-201ENST00000412782 1185 ntBASIC17.74■□□□□ 0.43
COL9A1P20849 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
COL9A1P20849 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.74■□□□□ 0.43
COL9A1P20849 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.74■□□□□ 0.43
COL9A1P20849 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.74■□□□□ 0.43
COL9A1P20849 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.74■□□□□ 0.43
COL9A1P20849 AC099568.2-201ENST00000609194 695 ntBASIC17.74■□□□□ 0.43
COL9A1P20849 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.74■□□□□ 0.43
COL9A1P20849 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.74■□□□□ 0.43
COL9A1P20849 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 AC135776.1-201ENST00000319817 2481 ntBASIC17.74■□□□□ 0.43
COL9A1P20849 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL9A1P20849 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.74■□□□□ 0.43
COL9A1P20849 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
COL9A1P20849 AC092919.2-201ENST00000623631 1645 ntBASIC17.73■□□□□ 0.43
COL9A1P20849 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL9A1P20849 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.73■□□□□ 0.43
COL9A1P20849 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL9A1P20849 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL9A1P20849 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL9A1P20849 GPS2P2-201ENST00000430745 888 ntBASIC17.73■□□□□ 0.43
COL9A1P20849 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
COL9A1P20849 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.73■□□□□ 0.43
COL9A1P20849 AC132872.1-201ENST00000566986 1195 ntBASIC17.73■□□□□ 0.43
COL9A1P20849 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL9A1P20849 AC109462.3-201ENST00000573934 613 ntBASIC17.73■□□□□ 0.43
COL9A1P20849 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.73■□□□□ 0.43
COL9A1P20849 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.73■□□□□ 0.43
COL9A1P20849 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms