Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
COL4A1P02462 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.03■□□□□ 0.96
COL4A1P02462 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
COL4A1P02462 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
COL4A1P02462 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.03■□□□□ 0.96
COL4A1P02462 SPDYE11-202ENST00000450699 704 ntBASIC21.03■□□□□ 0.96
COL4A1P02462 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COL4A1P02462 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
COL4A1P02462 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 SPDYE9P-201ENST00000570642 692 ntBASIC21.03■□□□□ 0.96
COL4A1P02462 AC011467.4-201ENST00000594891 528 ntBASIC21.03■□□□□ 0.96
COL4A1P02462 AL096865.1-201ENST00000606796 927 ntBASIC21.03■□□□□ 0.96
COL4A1P02462 SPDYE10P-202ENST00000612005 668 ntBASIC21.03■□□□□ 0.96
COL4A1P02462 SPDYE8P-202ENST00000612377 668 ntBASIC21.03■□□□□ 0.96
COL4A1P02462 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL4A1P02462 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL4A1P02462 AC133963.1-201ENST00000504166 1679 ntBASIC21.03■□□□□ 0.96
COL4A1P02462 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL4A1P02462 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.03■□□□□ 0.96
COL4A1P02462 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.03■□□□□ 0.96
COL4A1P02462 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
COL4A1P02462 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A1P02462 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A1P02462 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A1P02462 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
COL4A1P02462 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A1P02462 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A1P02462 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A1P02462 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
COL4A1P02462 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A1P02462 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A1P02462 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A1P02462 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A1P02462 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A1P02462 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A1P02462 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A1P02462 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A1P02462 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A1P02462 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A1P02462 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A1P02462 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.02■□□□□ 0.95
COL4A1P02462 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A1P02462 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC21.02■□□□□ 0.95
COL4A1P02462 AC051619.7-201ENST00000568314 623 ntBASIC21.02■□□□□ 0.95
COL4A1P02462 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.02■□□□□ 0.95
COL4A1P02462 AL009183.1-201ENST00000603760 355 ntBASIC21.02■□□□□ 0.95
COL4A1P02462 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A1P02462 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A1P02462 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A1P02462 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A1P02462 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A1P02462 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL4A1P02462 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.01■□□□□ 0.95
COL4A1P02462 TFAMP1-201ENST00000412727 736 ntBASIC21.01■□□□□ 0.95
COL4A1P02462 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 DUX4L27-201ENST00000554796 1261 ntBASIC21.01■□□□□ 0.95
COL4A1P02462 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC21.01■□□□□ 0.95
COL4A1P02462 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL4A1P02462 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A1P02462 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A1P02462 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21■□□□□ 0.95
COL4A1P02462 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL4A1P02462 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
COL4A1P02462 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC21■□□□□ 0.95
COL4A1P02462 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL4A1P02462 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A1P02462 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC21■□□□□ 0.95
COL4A1P02462 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A1P02462 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A1P02462 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL4A1P02462 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms