Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SHOX2O60902 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.42■□□□□ 0.38
SHOX2O60902 ME2P1-201ENST00000426028 1970 ntBASIC17.42■□□□□ 0.38
SHOX2O60902 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.42■□□□□ 0.38
SHOX2O60902 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.42■□□□□ 0.38
SHOX2O60902 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.42■□□□□ 0.38
SHOX2O60902 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.42■□□□□ 0.38
SHOX2O60902 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.42■□□□□ 0.38
SHOX2O60902 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.42■□□□□ 0.38
SHOX2O60902 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 MTDHP1-201ENST00000605323 784 ntBASIC17.42■□□□□ 0.38
SHOX2O60902 AL023875.1-201ENST00000640777 796 ntBASIC17.42■□□□□ 0.38
SHOX2O60902 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
SHOX2O60902 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.42■□□□□ 0.38
SHOX2O60902 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SHOX2O60902 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SHOX2O60902 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 BX276092.7-203ENST00000637198 1536 ntBASIC17.42■□□□□ 0.38
SHOX2O60902 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SHOX2O60902 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.41■□□□□ 0.38
SHOX2O60902 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.41■□□□□ 0.38
SHOX2O60902 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SHOX2O60902 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.41■□□□□ 0.38
SHOX2O60902 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SHOX2O60902 NIFKP9-201ENST00000419265 221 ntBASIC17.41■□□□□ 0.38
SHOX2O60902 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.41■□□□□ 0.38
SHOX2O60902 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.41■□□□□ 0.38
SHOX2O60902 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.41■□□□□ 0.38
SHOX2O60902 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SHOX2O60902 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.41■□□□□ 0.38
SHOX2O60902 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.41■□□□□ 0.38
SHOX2O60902 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.41■□□□□ 0.38
SHOX2O60902 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 AC069544.1-201ENST00000609399 999 ntBASIC17.41■□□□□ 0.38
SHOX2O60902 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.41■□□□□ 0.38
SHOX2O60902 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.41■□□□□ 0.38
SHOX2O60902 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SHOX2O60902 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SHOX2O60902 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHOX2O60902 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.4■□□□□ 0.38
SHOX2O60902 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.4■□□□□ 0.38
SHOX2O60902 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.4■□□□□ 0.38
SHOX2O60902 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.4■□□□□ 0.38
SHOX2O60902 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SHOX2O60902 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.4■□□□□ 0.38
SHOX2O60902 FAM207BP-201ENST00000447172 505 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms