Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 OR6D1P-202ENST00000641007 5290 ntBASIC19.01■□□□□ 0.63
CLDN3O15551 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CLDN3O15551 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19■□□□□ 0.63
CLDN3O15551 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19■□□□□ 0.63
CLDN3O15551 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19■□□□□ 0.63
CLDN3O15551 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19■□□□□ 0.63
CLDN3O15551 LAGE3P1-201ENST00000425356 484 ntBASIC19■□□□□ 0.63
CLDN3O15551 AC079776.4-201ENST00000511039 504 ntBASIC19■□□□□ 0.63
CLDN3O15551 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19■□□□□ 0.63
CLDN3O15551 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19■□□□□ 0.63
CLDN3O15551 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CLDN3O15551 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19■□□□□ 0.63
CLDN3O15551 AL589182.2-201ENST00000619332 1049 ntBASIC19■□□□□ 0.63
CLDN3O15551 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CLDN3O15551 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19■□□□□ 0.63
CLDN3O15551 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19■□□□□ 0.63
CLDN3O15551 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19■□□□□ 0.63
CLDN3O15551 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19■□□□□ 0.63
CLDN3O15551 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19■□□□□ 0.63
CLDN3O15551 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN3O15551 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CLDN3O15551 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 AC097637.2-201ENST00000624096 1997 ntBASIC18.99■□□□□ 0.63
CLDN3O15551 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CLDN3O15551 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN3O15551 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN3O15551 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CLDN3O15551 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.99■□□□□ 0.63
CLDN3O15551 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN3O15551 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.99■□□□□ 0.63
CLDN3O15551 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN3O15551 AC139887.3-201ENST00000568585 713 ntBASIC18.99■□□□□ 0.63
CLDN3O15551 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN3O15551 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.99■□□□□ 0.63
CLDN3O15551 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN3O15551 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN3O15551 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN3O15551 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CLDN3O15551 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN3O15551 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN3O15551 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.98■□□□□ 0.63
CLDN3O15551 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.98■□□□□ 0.63
CLDN3O15551 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.98■□□□□ 0.63
CLDN3O15551 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.98■□□□□ 0.63
CLDN3O15551 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN3O15551 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN3O15551 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CLDN3O15551 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN3O15551 NCF1C-201ENST00000438382 1427 ntBASIC18.98■□□□□ 0.63
CLDN3O15551 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 AL135999.2-201ENST00000622438 1686 ntBASIC18.98■□□□□ 0.63
CLDN3O15551 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN3O15551 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CLDN3O15551 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CLDN3O15551 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN3O15551 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
CLDN3O15551 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms