Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX2O14529 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 MIR346-201ENST00000362234 95 ntBASIC29.36■■■□□ 2.29
CUX2O14529 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC29.36■■■□□ 2.29
CUX2O14529 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC29.36■■■□□ 2.29
CUX2O14529 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC29.36■■■□□ 2.29
CUX2O14529 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 AC008267.7-201ENST00000624570 1194 ntBASIC29.36■■■□□ 2.29
CUX2O14529 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
CUX2O14529 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
CUX2O14529 AL355994.2-201ENST00000447882 704 ntBASIC29.36■■■□□ 2.29
CUX2O14529 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX2O14529 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CUX2O14529 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CUX2O14529 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC29.35■■■□□ 2.29
CUX2O14529 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
CUX2O14529 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CUX2O14529 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CUX2O14529 SP100-208ENST00000427101 1922 ntTSL 2 BASIC29.35■■■□□ 2.29
CUX2O14529 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CUX2O14529 AC107918.2-201ENST00000530817 355 ntBASIC29.35■■■□□ 2.29
CUX2O14529 AC004790.1-201ENST00000612686 536 ntBASIC29.35■■■□□ 2.29
CUX2O14529 AC007431.3-201ENST00000623221 587 ntBASIC29.35■■■□□ 2.29
CUX2O14529 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX2O14529 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
CUX2O14529 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX2O14529 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX2O14529 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC29.34■■■□□ 2.29
CUX2O14529 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC29.34■■■□□ 2.29
CUX2O14529 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX2O14529 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC29.34■■■□□ 2.29
CUX2O14529 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX2O14529 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC29.34■■■□□ 2.29
CUX2O14529 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC29.34■■■□□ 2.29
CUX2O14529 AC109462.3-201ENST00000573934 613 ntBASIC29.34■■■□□ 2.29
CUX2O14529 NAT9-224ENST00000583757 583 ntTSL 3 BASIC29.34■■■□□ 2.29
CUX2O14529 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC29.34■■■□□ 2.29
CUX2O14529 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
CUX2O14529 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC29.33■■■□□ 2.29
CUX2O14529 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX2O14529 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
CUX2O14529 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC29.33■■■□□ 2.29
CUX2O14529 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
CUX2O14529 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC29.33■■■□□ 2.29
CUX2O14529 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX2O14529 AL031598.1-201ENST00000561511 1773 ntBASIC29.33■■■□□ 2.29
CUX2O14529 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX2O14529 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC29.33■■■□□ 2.29
CUX2O14529 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC29.33■■■□□ 2.29
CUX2O14529 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX2O14529 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 BOLA2P3-201ENST00000404566 256 ntBASIC29.33■■■□□ 2.29
CUX2O14529 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC29.33■■■□□ 2.29
CUX2O14529 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC29.33■■■□□ 2.29
CUX2O14529 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC29.33■■■□□ 2.29
CUX2O14529 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC29.33■■■□□ 2.29
CUX2O14529 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC29.33■■■□□ 2.29
CUX2O14529 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC29.33■■■□□ 2.29
CUX2O14529 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC29.33■■■□□ 2.29
CUX2O14529 AL009183.1-201ENST00000603760 355 ntBASIC29.33■■■□□ 2.29
CUX2O14529 TUBB1P2-201ENST00000422712 1306 ntBASIC29.33■■■□□ 2.29
CUX2O14529 TUBB1P1-201ENST00000503144 1300 ntBASIC29.33■■■□□ 2.29
CUX2O14529 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
CUX2O14529 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX2O14529 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC29.32■■■□□ 2.28
CUX2O14529 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX2O14529 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX2O14529 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CUX2O14529 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC29.32■■■□□ 2.28
CUX2O14529 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC29.32■■■□□ 2.28
CUX2O14529 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CUX2O14529 AC087499.5-201ENST00000452760 1342 ntBASIC29.32■■■□□ 2.28
CUX2O14529 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC29.32■■■□□ 2.28
CUX2O14529 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC29.32■■■□□ 2.28
CUX2O14529 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX2O14529 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CUX2O14529 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC29.31■■■□□ 2.28
CUX2O14529 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC29.31■■■□□ 2.28
CUX2O14529 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
CUX2O14529 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC29.31■■■□□ 2.28
CUX2O14529 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms