Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AC027307.2-201ENST00000591252 911 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 CTBP2P3-201ENST00000585629 1255 ntBASIC13.3□□□□□ -0.28
COL6A5A8TX70 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
COL6A5A8TX70 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A5A8TX70 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 CALR4P-201ENST00000431943 946 ntBASIC13.29□□□□□ -0.28
COL6A5A8TX70 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 AC244093.1-201ENST00000610837 814 ntBASIC13.29□□□□□ -0.28
COL6A5A8TX70 AC015967.2-201ENST00000624092 234 ntBASIC13.29□□□□□ -0.28
COL6A5A8TX70 AC006435.4-201ENST00000625037 234 ntBASIC13.29□□□□□ -0.28
COL6A5A8TX70 AL356737.1-201ENST00000634391 234 ntBASIC13.29□□□□□ -0.28
COL6A5A8TX70 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A5A8TX70 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 AL021578.1-201ENST00000613646 709 ntBASIC13.29□□□□□ -0.28
COL6A5A8TX70 AC007431.3-201ENST00000623221 587 ntBASIC13.29□□□□□ -0.28
COL6A5A8TX70 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A5A8TX70 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms