Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 STK19B-204ENST00000512515 211 ntBASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 AC074051.2-201ENST00000565115 352 ntBASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 AC114341.1-201ENST00000618070 349 ntBASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 AD001527.2-201ENST00000622994 785 ntBASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 AP001094.4-201ENST00000579008 2176 ntBASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
VPS9D1Q9Y2B5 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 FZD10-202ENST00000539839 3282 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 INTS4P1-201ENST00000438455 1935 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 KLF4P1-201ENST00000412782 1185 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 MIR3180-1-201ENST00000580374 94 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 MIR3180-3-201ENST00000584616 94 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 BNIP3P18-201ENST00000593976 575 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 AL445228.2-201ENST00000605589 952 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 NPAP1P7-201ENST00000613027 823 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 AC009336.1-201ENST00000608941 1553 ntBASIC17.32■□□□□ 0.36
VPS9D1Q9Y2B5 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 PRORSD1P-202ENST00000563365 2154 ntBASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 AP000867.3-201ENST00000524675 377 ntBASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 AL121761.2-201ENST00000598007 1648 ntBASIC17.31■□□□□ 0.36
VPS9D1Q9Y2B5 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms