Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.89■□□□□ 0.3
VPS4AQ9UN37 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS4AQ9UN37 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 KRT16P4-201ENST00000453883 522 ntBASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 AC092865.5-201ENST00000545435 363 ntBASIC16.89■□□□□ 0.29
VPS4AQ9UN37 AC099336.1-202ENST00000602961 463 ntBASIC16.89■□□□□ 0.29
VPS4AQ9UN37 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4AQ9UN37 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 MIR1233-2-201ENST00000408138 82 ntBASIC16.88■□□□□ 0.29
VPS4AQ9UN37 MIR1233-1-201ENST00000408722 82 ntBASIC16.88■□□□□ 0.29
VPS4AQ9UN37 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 AP001005.1-201ENST00000571755 1248 ntBASIC16.88■□□□□ 0.29
VPS4AQ9UN37 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 Z83836.1-201ENST00000624605 1642 ntBASIC16.88■□□□□ 0.29
VPS4AQ9UN37 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4AQ9UN37 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 LINC00304-203ENST00000565008 1864 ntBASIC16.87■□□□□ 0.29
VPS4AQ9UN37 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 RNF126P1-202ENST00000569893 925 ntBASIC16.87■□□□□ 0.29
VPS4AQ9UN37 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms