Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 AC148477.5-201ENST00000625164 1645 ntBASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.41■□□□□ 0.38
TM9SF3Q9HD45 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 GNAS-203ENST00000306120 1878 ntBASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 KLF4P1-201ENST00000412782 1185 ntBASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 AC135776.1-201ENST00000319817 2481 ntBASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.4■□□□□ 0.38
TM9SF3Q9HD45 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
TM9SF3Q9HD45 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TM9SF3Q9HD45 NCF1C-201ENST00000438382 1427 ntBASIC17.39■□□□□ 0.38
TM9SF3Q9HD45 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 SLC25A6P5-201ENST00000435663 894 ntBASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM9SF3Q9HD45 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 AC003669.1-201ENST00000334569 611 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms