Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.43■□□□□ 0.38
TTC28Q96AY4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TTC28Q96AY4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 U62317.3-201ENST00000608319 855 ntBASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC005229.1-201ENST00000392885 409 ntBASIC17.42■□□□□ 0.38
TTC28Q96AY4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.42■□□□□ 0.38
TTC28Q96AY4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.42■□□□□ 0.38
TTC28Q96AY4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TTC28Q96AY4 AL032819.2-201ENST00000624543 2162 ntBASIC17.42■□□□□ 0.38
TTC28Q96AY4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 ESPNP-201ENST00000270691 2015 ntBASIC17.41■□□□□ 0.38
TTC28Q96AY4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 AC018665.1-201ENST00000622927 1362 ntBASIC17.41■□□□□ 0.38
TTC28Q96AY4 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 AL355334.1-201ENST00000417713 215 ntBASIC17.41■□□□□ 0.38
TTC28Q96AY4 HINT2P1-201ENST00000419438 481 ntBASIC17.41■□□□□ 0.38
TTC28Q96AY4 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 AC105129.2-201ENST00000559536 390 ntBASIC17.41■□□□□ 0.38
TTC28Q96AY4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.41■□□□□ 0.38
TTC28Q96AY4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TTC28Q96AY4 LINC00565-201ENST00000562710 2331 ntBASIC17.41■□□□□ 0.38
TTC28Q96AY4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms