Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 AP006288.1-201ENST00000446065 395 ntBASIC16.91■□□□□ 0.3
LMX1AQ8TE12 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.91■□□□□ 0.3
LMX1AQ8TE12 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 YBX1P5-201ENST00000509441 847 ntBASIC16.9■□□□□ 0.3
LMX1AQ8TE12 KRT19P2-202ENST00000557173 1012 ntBASIC16.9■□□□□ 0.3
LMX1AQ8TE12 PDPK2P-202ENST00000562415 1191 ntBASIC16.9■□□□□ 0.3
LMX1AQ8TE12 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1AQ8TE12 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 AC025580.3-201ENST00000617932 1424 ntBASIC16.89■□□□□ 0.29
LMX1AQ8TE12 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 CEND1P1-201ENST00000451006 455 ntBASIC16.89■□□□□ 0.29
LMX1AQ8TE12 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 AL139327.4-201ENST00000612362 153 ntBASIC16.89■□□□□ 0.29
LMX1AQ8TE12 AC007064.4-201ENST00000637740 555 ntBASIC16.89■□□□□ 0.29
LMX1AQ8TE12 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms