Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR4469-201ENST00000583919 79 ntBASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 AL353135.1-201ENST00000606729 504 ntBASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 AC004790.2-201ENST00000623588 572 ntBASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 AC026471.1-201ENST00000564629 3026 ntBASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 PTCHD3P3-201ENST00000403073 906 ntBASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 HTR5BP-201ENST00000430851 1154 ntBASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 KRT18P2-201ENST00000447938 1258 ntBASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 AL805961.1-202ENST00000641562 540 ntBASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 GPR89P-201ENST00000407924 1495 ntBASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDDC3Q8N4P3 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 AL645939.2-201ENST00000427340 991 ntBASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 VN2R19P-201ENST00000442399 1052 ntBASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms