Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 REXO1L9P-201ENST00000604264 2108 ntBASIC18.22■□□□□ 0.51
CHD9Q3L8U1 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 AC138969.3-201ENST00000546612 1459 ntBASIC18.22■□□□□ 0.51
CHD9Q3L8U1 AC138932.2-201ENST00000548268 1459 ntBASIC18.22■□□□□ 0.51
CHD9Q3L8U1 AC126755.4-201ENST00000549796 1459 ntBASIC18.22■□□□□ 0.51
CHD9Q3L8U1 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.22■□□□□ 0.51
CHD9Q3L8U1 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.22■□□□□ 0.51
CHD9Q3L8U1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 AL512384.1-201ENST00000406683 331 ntBASIC18.21■□□□□ 0.51
CHD9Q3L8U1 AC027369.6-201ENST00000525520 931 ntBASIC18.21■□□□□ 0.51
CHD9Q3L8U1 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 AC109635.5-201ENST00000533593 962 ntBASIC18.21■□□□□ 0.51
CHD9Q3L8U1 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 TP53TG3HP-202ENST00000569755 579 ntBASIC18.21■□□□□ 0.51
CHD9Q3L8U1 AL009183.1-201ENST00000603760 355 ntBASIC18.21■□□□□ 0.51
CHD9Q3L8U1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 MIR6080-201ENST00000617359 66 ntBASIC18.21■□□□□ 0.51
CHD9Q3L8U1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.21■□□□□ 0.51
CHD9Q3L8U1 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CHD9Q3L8U1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 AL020996.1-203ENST00000536896 2307 ntBASIC18.2■□□□□ 0.5
CHD9Q3L8U1 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.2■□□□□ 0.5
CHD9Q3L8U1 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 AC241585.1-201ENST00000433527 519 ntBASIC18.19■□□□□ 0.5
CHD9Q3L8U1 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHD9Q3L8U1 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms