Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
HMGCS2P54868 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.97■□□□□ 0.79
HMGCS2P54868 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HMGCS2P54868 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGCS2P54868 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HMGCS2P54868 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
HMGCS2P54868 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGCS2P54868 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
HMGCS2P54868 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGCS2P54868 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HMGCS2P54868 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGCS2P54868 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
HMGCS2P54868 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
HMGCS2P54868 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
HMGCS2P54868 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGCS2P54868 AL355306.1-201ENST00000415580 579 ntBASIC19.96■□□□□ 0.79
HMGCS2P54868 BCRP1-201ENST00000444246 691 ntBASIC19.96■□□□□ 0.79
HMGCS2P54868 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HMGCS2P54868 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
HMGCS2P54868 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGCS2P54868 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGCS2P54868 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGCS2P54868 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
HMGCS2P54868 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.96■□□□□ 0.79
HMGCS2P54868 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGCS2P54868 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.95■□□□□ 0.78
HMGCS2P54868 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.95■□□□□ 0.78
HMGCS2P54868 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.95■□□□□ 0.78
HMGCS2P54868 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGCS2P54868 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGCS2P54868 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.95■□□□□ 0.78
HMGCS2P54868 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.95■□□□□ 0.78
HMGCS2P54868 AC107918.2-201ENST00000530817 355 ntBASIC19.95■□□□□ 0.78
HMGCS2P54868 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.95■□□□□ 0.78
HMGCS2P54868 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.95■□□□□ 0.78
HMGCS2P54868 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.95■□□□□ 0.78
HMGCS2P54868 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.95■□□□□ 0.78
HMGCS2P54868 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGCS2P54868 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGCS2P54868 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HMGCS2P54868 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
HMGCS2P54868 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGCS2P54868 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGCS2P54868 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.94■□□□□ 0.78
HMGCS2P54868 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGCS2P54868 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGCS2P54868 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HMGCS2P54868 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGCS2P54868 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.94■□□□□ 0.78
HMGCS2P54868 AL035633.1-201ENST00000406139 838 ntBASIC19.94■□□□□ 0.78
HMGCS2P54868 AL627223.1-201ENST00000416693 442 ntBASIC19.94■□□□□ 0.78
HMGCS2P54868 AL671277.1-201ENST00000429656 993 ntBASIC19.94■□□□□ 0.78
HMGCS2P54868 KRT8P48-201ENST00000515599 1220 ntBASIC19.94■□□□□ 0.78
HMGCS2P54868 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
HMGCS2P54868 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
HMGCS2P54868 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.94■□□□□ 0.78
HMGCS2P54868 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.94■□□□□ 0.78
HMGCS2P54868 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
HMGCS2P54868 AC005498.2-205ENST00000593218 784 ntBASIC19.94■□□□□ 0.78
HMGCS2P54868 AL096865.1-201ENST00000606796 927 ntBASIC19.94■□□□□ 0.78
HMGCS2P54868 AC026120.1-201ENST00000611536 926 ntBASIC19.94■□□□□ 0.78
HMGCS2P54868 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.94■□□□□ 0.78
HMGCS2P54868 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGCS2P54868 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGCS2P54868 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGCS2P54868 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGCS2P54868 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGCS2P54868 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGCS2P54868 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.93■□□□□ 0.78
HMGCS2P54868 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HMGCS2P54868 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGCS2P54868 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms