Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.27■□□□□ 0.52
APOEP02649 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.27■□□□□ 0.52
APOEP02649 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
APOEP02649 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
APOEP02649 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.27■□□□□ 0.52
APOEP02649 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 AC002558.1-201ENST00000488906 803 ntBASIC18.27■□□□□ 0.52
APOEP02649 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.27■□□□□ 0.52
APOEP02649 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.27■□□□□ 0.52
APOEP02649 AC109462.3-201ENST00000573934 613 ntBASIC18.27■□□□□ 0.52
APOEP02649 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
APOEP02649 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.27■□□□□ 0.52
APOEP02649 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.27■□□□□ 0.52
APOEP02649 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
APOEP02649 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 PP12613-201ENST00000424958 2230 ntBASIC18.27■□□□□ 0.52
APOEP02649 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
APOEP02649 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
APOEP02649 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
APOEP02649 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.27■□□□□ 0.51
APOEP02649 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
APOEP02649 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
APOEP02649 AP005117.1-201ENST00000584346 1413 ntBASIC18.26■□□□□ 0.51
APOEP02649 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
APOEP02649 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.26■□□□□ 0.51
APOEP02649 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
APOEP02649 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 MTDHP3-201ENST00000594186 672 ntBASIC18.26■□□□□ 0.51
APOEP02649 AL121894.2-201ENST00000602977 491 ntBASIC18.26■□□□□ 0.51
APOEP02649 AC019129.2-201ENST00000609837 1235 ntBASIC18.26■□□□□ 0.51
APOEP02649 AL355877.3-201ENST00000622820 899 ntBASIC18.26■□□□□ 0.51
APOEP02649 AD001527.2-201ENST00000622994 785 ntBASIC18.26■□□□□ 0.51
APOEP02649 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.26■□□□□ 0.51
APOEP02649 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.26■□□□□ 0.51
APOEP02649 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
APOEP02649 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.26■□□□□ 0.51
APOEP02649 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.25■□□□□ 0.51
APOEP02649 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.25■□□□□ 0.51
APOEP02649 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.25■□□□□ 0.51
APOEP02649 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.25■□□□□ 0.51
APOEP02649 AF238378.1-201ENST00000526806 358 ntBASIC18.25■□□□□ 0.51
APOEP02649 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.25■□□□□ 0.51
APOEP02649 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 AL121912.1-201ENST00000603683 238 ntBASIC18.25■□□□□ 0.51
APOEP02649 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.25■□□□□ 0.51
APOEP02649 AC073592.5-201ENST00000624854 528 ntBASIC18.25■□□□□ 0.51
APOEP02649 AP000867.4-201ENST00000641616 219 ntBASIC18.25■□□□□ 0.51
APOEP02649 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
APOEP02649 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
APOEP02649 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.25■□□□□ 0.51
APOEP02649 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.25■□□□□ 0.51
APOEP02649 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 AL049757.1-201ENST00000616842 1596 ntBASIC18.25■□□□□ 0.51
APOEP02649 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
APOEP02649 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 KRT8P10-201ENST00000450021 1447 ntBASIC18.24■□□□□ 0.51
APOEP02649 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms