Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
NPHP1O15259 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP1O15259 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP1O15259 PI4KAP1-204ENST00000612579 1703 ntBASIC21.91■■□□□ 1.1
NPHP1O15259 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP1O15259 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP1O15259 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC21.91■■□□□ 1.1
NPHP1O15259 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC21.91■■□□□ 1.1
NPHP1O15259 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.91■■□□□ 1.1
NPHP1O15259 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
NPHP1O15259 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
NPHP1O15259 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 AC073592.3-201ENST00000625118 1834 ntBASIC21.9■■□□□ 1.1
NPHP1O15259 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
NPHP1O15259 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.9■■□□□ 1.1
NPHP1O15259 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.9■■□□□ 1.1
NPHP1O15259 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.9■■□□□ 1.1
NPHP1O15259 STK25P1-201ENST00000585406 838 ntBASIC21.9■■□□□ 1.1
NPHP1O15259 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
NPHP1O15259 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
NPHP1O15259 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP1O15259 AC009949.1-201ENST00000623048 1830 ntBASIC21.9■■□□□ 1.1
NPHP1O15259 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP1O15259 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP1O15259 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP1O15259 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.89■■□□□ 1.1
NPHP1O15259 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.1
NPHP1O15259 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.89■■□□□ 1.1
NPHP1O15259 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.89■■□□□ 1.1
NPHP1O15259 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.89■■□□□ 1.1
NPHP1O15259 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP1O15259 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 LINC00982-205ENST00000420957 435 ntBASIC21.89■■□□□ 1.09
NPHP1O15259 ACTG1P14-201ENST00000446382 1122 ntBASIC21.89■■□□□ 1.09
NPHP1O15259 AP000344.2-201ENST00000512987 629 ntBASIC21.89■■□□□ 1.09
NPHP1O15259 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
NPHP1O15259 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.89■■□□□ 1.09
NPHP1O15259 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC21.89■■□□□ 1.09
NPHP1O15259 RIN3-211ENST00000557762 517 ntTSL 3 BASIC21.89■■□□□ 1.09
NPHP1O15259 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.89■■□□□ 1.09
NPHP1O15259 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.89■■□□□ 1.09
NPHP1O15259 AC027612.4-201ENST00000605371 583 ntBASIC21.89■■□□□ 1.09
NPHP1O15259 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.89■■□□□ 1.09
NPHP1O15259 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.89■■□□□ 1.09
NPHP1O15259 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.89■■□□□ 1.09
NPHP1O15259 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.89■■□□□ 1.09
NPHP1O15259 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP1O15259 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.88■■□□□ 1.09
NPHP1O15259 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.88■■□□□ 1.09
NPHP1O15259 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.88■■□□□ 1.09
NPHP1O15259 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.88■■□□□ 1.09
NPHP1O15259 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
NPHP1O15259 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.88■■□□□ 1.09
NPHP1O15259 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC21.88■■□□□ 1.09
NPHP1O15259 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 AC100803.2-201ENST00000562459 1963 ntBASIC21.88■■□□□ 1.09
NPHP1O15259 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
NPHP1O15259 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP1O15259 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 AC009336.1-201ENST00000608941 1553 ntBASIC21.87■■□□□ 1.09
NPHP1O15259 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
NPHP1O15259 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP1O15259 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP1O15259 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.87■■□□□ 1.09
NPHP1O15259 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.87■■□□□ 1.09
NPHP1O15259 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
NPHP1O15259 AC091812.2-201ENST00000619081 385 ntBASIC21.87■■□□□ 1.09
NPHP1O15259 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 CROCCP1-201ENST00000426910 5675 ntBASIC21.87■■□□□ 1.09
NPHP1O15259 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms