Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX1O00570 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX1O00570 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SOX1O00570 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 ANKRD19P-201ENST00000338192 862 ntBASIC18.35■□□□□ 0.53
SOX1O00570 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX1O00570 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 AC107918.2-201ENST00000530817 355 ntBASIC18.35■□□□□ 0.53
SOX1O00570 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 AL844908.2-201ENST00000609461 460 ntBASIC18.35■□□□□ 0.53
SOX1O00570 MIR6727-201ENST00000620702 65 ntBASIC18.35■□□□□ 0.53
SOX1O00570 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX1O00570 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SOX1O00570 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX1O00570 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SOX1O00570 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX1O00570 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SOX1O00570 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX1O00570 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SOX1O00570 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SOX1O00570 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SOX1O00570 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SOX1O00570 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SOX1O00570 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX1O00570 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 HMGA1P7-201ENST00000406908 502 ntBASIC18.34■□□□□ 0.53
SOX1O00570 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX1O00570 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX1O00570 GOLGA2P4-201ENST00000441462 777 ntBASIC18.34■□□□□ 0.53
SOX1O00570 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX1O00570 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 HLA-V-204ENST00000476601 1289 ntBASIC18.34■□□□□ 0.53
SOX1O00570 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.34■□□□□ 0.53
SOX1O00570 RHOQP1-201ENST00000555758 579 ntBASIC18.34■□□□□ 0.53
SOX1O00570 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.34■□□□□ 0.53
SOX1O00570 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SOX1O00570 AC027307.2-201ENST00000591252 911 ntBASIC18.34■□□□□ 0.53
SOX1O00570 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.34■□□□□ 0.53
SOX1O00570 AC008735.3-201ENST00000596646 500 ntBASIC18.34■□□□□ 0.53
SOX1O00570 AL009183.1-201ENST00000603760 355 ntBASIC18.34■□□□□ 0.53
SOX1O00570 AC008267.7-201ENST00000624570 1194 ntBASIC18.34■□□□□ 0.53
SOX1O00570 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SOX1O00570 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX1O00570 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.33■□□□□ 0.53
SOX1O00570 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SOX1O00570 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SOX1O00570 SLC25A24-204ENST00000569674 2357 ntBASIC18.33■□□□□ 0.53
SOX1O00570 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.33■□□□□ 0.53
SOX1O00570 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.33■□□□□ 0.53
SOX1O00570 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SOX1O00570 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX1O00570 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX1O00570 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.33■□□□□ 0.52
SOX1O00570 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.33■□□□□ 0.52
SOX1O00570 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SOX1O00570 ACTG1P4-201ENST00000425123 1122 ntBASIC18.33■□□□□ 0.52
SOX1O00570 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.33■□□□□ 0.52
SOX1O00570 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.33■□□□□ 0.52
SOX1O00570 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.33■□□□□ 0.52
SOX1O00570 MIR4515-201ENST00000584082 81 ntBASIC18.33■□□□□ 0.52
SOX1O00570 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX1O00570 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX1O00570 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.33■□□□□ 0.52
SOX1O00570 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.33■□□□□ 0.52
SOX1O00570 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.33■□□□□ 0.52
SOX1O00570 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX1O00570 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX1O00570 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX1O00570 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX1O00570 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
SOX1O00570 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX1O00570 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX1O00570 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.32■□□□□ 0.52
SOX1O00570 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.32■□□□□ 0.52
SOX1O00570 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.32■□□□□ 0.52
SOX1O00570 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
SOX1O00570 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.32■□□□□ 0.52
SOX1O00570 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX1O00570 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX1O00570 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms