Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 AL023973.1-201ENST00000624619 620 ntBASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 AC106886.4-201ENST00000623557 2502 ntBASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
DEPDC4Q8N2C3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 AC132938.6-201ENST00000623828 1655 ntBASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.27■□□□□ 0.19
DEPDC4Q8N2C3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 AC034232.1-201ENST00000506026 1064 ntBASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 CR769767.2-201ENST00000622735 460 ntBASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.26■□□□□ 0.19
DEPDC4Q8N2C3 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms