Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AC026396.1-201ENST00000419388 421 ntBASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AL357033.4-201ENST00000617703 1807 ntBASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AC021242.3-201ENST00000607598 1377 ntBASIC10.85□□□□□ -0.67
LINC00643Q86TS7 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 KATNBL1P6-202ENST00000562413 1466 ntBASIC10.85□□□□□ -0.67
LINC00643Q86TS7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 POLL-217ENST00000628479 1953 ntTSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 KRT8P9-201ENST00000558927 1449 ntBASIC10.84□□□□□ -0.67
LINC00643Q86TS7 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms