Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 HCG4B-203ENST00000450128 991 ntBASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBE3BQ7Z3V4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 YBX2P1-201ENST00000394192 760 ntBASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 MIR1233-2-201ENST00000408138 82 ntBASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 MIR1233-1-201ENST00000408722 82 ntBASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 IGLL3P-201ENST00000412472 434 ntBASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 PRSS29P-201ENST00000440800 595 ntBASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 AC018845.2-201ENST00000568326 409 ntBASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBE3BQ7Z3V4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 PI4KAP1-204ENST00000612579 1703 ntBASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 MRPL20P1-201ENST00000400819 433 ntBASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 OR7E47P-204ENST00000575924 449 ntBASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 AC010327.4-202ENST00000591484 748 ntBASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBE3BQ7Z3V4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 AC010654.1-201ENST00000615722 808 ntBASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UBE3BQ7Z3V4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms