Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.72■□□□□ 0.43
USP39Q53GS9 KRT18P2-201ENST00000447938 1258 ntBASIC17.72■□□□□ 0.43
USP39Q53GS9 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.72■□□□□ 0.43
USP39Q53GS9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.72■□□□□ 0.43
USP39Q53GS9 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.72■□□□□ 0.43
USP39Q53GS9 AC073592.5-201ENST00000624854 528 ntBASIC17.72■□□□□ 0.43
USP39Q53GS9 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 OR6D1P-202ENST00000641007 5290 ntBASIC17.72■□□□□ 0.43
USP39Q53GS9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
USP39Q53GS9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
USP39Q53GS9 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
USP39Q53GS9 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
USP39Q53GS9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.72■□□□□ 0.43
USP39Q53GS9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP39Q53GS9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
USP39Q53GS9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.71■□□□□ 0.43
USP39Q53GS9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 AC132938.6-201ENST00000623828 1655 ntBASIC17.71■□□□□ 0.43
USP39Q53GS9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 KRT8P47-201ENST00000604727 1398 ntBASIC17.71■□□□□ 0.43
USP39Q53GS9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 AL020989.1-201ENST00000422979 469 ntBASIC17.71■□□□□ 0.43
USP39Q53GS9 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.71■□□□□ 0.43
USP39Q53GS9 METTL21AP1-201ENST00000438852 635 ntBASIC17.71■□□□□ 0.43
USP39Q53GS9 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.71■□□□□ 0.43
USP39Q53GS9 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
USP39Q53GS9 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.71■□□□□ 0.43
USP39Q53GS9 AC067852.2-201ENST00000590513 2313 ntBASIC17.71■□□□□ 0.43
USP39Q53GS9 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.71■□□□□ 0.43
USP39Q53GS9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP39Q53GS9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.71■□□□□ 0.42
USP39Q53GS9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.7■□□□□ 0.42
USP39Q53GS9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.7■□□□□ 0.42
USP39Q53GS9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.7■□□□□ 0.42
USP39Q53GS9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.7■□□□□ 0.42
USP39Q53GS9 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
USP39Q53GS9 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.7■□□□□ 0.42
USP39Q53GS9 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.7■□□□□ 0.42
USP39Q53GS9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.7■□□□□ 0.42
USP39Q53GS9 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.7■□□□□ 0.42
USP39Q53GS9 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
USP39Q53GS9 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.7■□□□□ 0.42
USP39Q53GS9 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
USP39Q53GS9 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms