Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.68■□□□□ 0.58
VCPP55072 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.68■□□□□ 0.58
VCPP55072 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VCPP55072 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 AP006288.1-201ENST00000446065 395 ntBASIC18.68■□□□□ 0.58
VCPP55072 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.68■□□□□ 0.58
VCPP55072 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.68■□□□□ 0.58
VCPP55072 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.68■□□□□ 0.58
VCPP55072 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 DUTP2-201ENST00000519164 463 ntBASIC18.68■□□□□ 0.58
VCPP55072 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.68■□□□□ 0.58
VCPP55072 AC008687.5-201ENST00000593746 558 ntBASIC18.68■□□□□ 0.58
VCPP55072 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.68■□□□□ 0.58
VCPP55072 AC132938.6-201ENST00000623828 1655 ntBASIC18.68■□□□□ 0.58
VCPP55072 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VCPP55072 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.68■□□□□ 0.58
VCPP55072 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCPP55072 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
VCPP55072 HLA-J-201ENST00000462773 1622 ntBASIC18.67■□□□□ 0.58
VCPP55072 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VCPP55072 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 HTR7P1-202ENST00000624664 4411 ntBASIC18.67■□□□□ 0.58
VCPP55072 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VCPP55072 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VCPP55072 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VCPP55072 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.67■□□□□ 0.58
VCPP55072 AC007967.2-201ENST00000432613 625 ntBASIC18.67■□□□□ 0.58
VCPP55072 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.67■□□□□ 0.58
VCPP55072 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.67■□□□□ 0.58
VCPP55072 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VCPP55072 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.67■□□□□ 0.58
VCPP55072 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.67■□□□□ 0.58
VCPP55072 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VCPP55072 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.67■□□□□ 0.58
VCPP55072 FZD10-202ENST00000539839 3282 ntBASIC18.67■□□□□ 0.58
VCPP55072 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VCPP55072 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCPP55072 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.67■□□□□ 0.58
VCPP55072 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VCPP55072 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.66■□□□□ 0.58
VCPP55072 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VCPP55072 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VCPP55072 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VCPP55072 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VCPP55072 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.66■□□□□ 0.58
VCPP55072 AC023274.1-201ENST00000418278 595 ntBASIC18.66■□□□□ 0.58
VCPP55072 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.66■□□□□ 0.58
VCPP55072 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.66■□□□□ 0.58
VCPP55072 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 HLA-J-203ENST00000494367 1087 ntBASIC18.66■□□□□ 0.58
VCPP55072 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.66■□□□□ 0.58
VCPP55072 RNA5SP416-201ENST00000516838 111 ntBASIC18.66■□□□□ 0.58
VCPP55072 AC002347.1-201ENST00000569543 541 ntBASIC18.66■□□□□ 0.58
VCPP55072 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.66■□□□□ 0.58
VCPP55072 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.66■□□□□ 0.58
VCPP55072 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.66■□□□□ 0.58
VCPP55072 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCPP55072 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.65■□□□□ 0.58
VCPP55072 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.65■□□□□ 0.58
VCPP55072 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms