Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX3P41225 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 AC004870.1-201ENST00000315132 882 ntBASIC16.45■□□□□ 0.22
SOX3P41225 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX3P41225 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.45■□□□□ 0.22
SOX3P41225 RCN1P2-201ENST00000398357 915 ntBASIC16.45■□□□□ 0.22
SOX3P41225 EMBP1-201ENST00000458200 901 ntBASIC16.45■□□□□ 0.22
SOX3P41225 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 AC009533.2-201ENST00000543664 586 ntBASIC16.45■□□□□ 0.22
SOX3P41225 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.45■□□□□ 0.22
SOX3P41225 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX3P41225 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.45■□□□□ 0.22
SOX3P41225 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX3P41225 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.45■□□□□ 0.22
SOX3P41225 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 KRT8P47-201ENST00000604727 1398 ntBASIC16.45■□□□□ 0.22
SOX3P41225 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX3P41225 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 AC011676.5-201ENST00000624864 2660 ntBASIC16.45■□□□□ 0.22
SOX3P41225 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX3P41225 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 NKILA-202ENST00000614771 2598 ntBASIC16.44■□□□□ 0.22
SOX3P41225 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.44■□□□□ 0.22
SOX3P41225 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SOX3P41225 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.44■□□□□ 0.22
SOX3P41225 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.44■□□□□ 0.22
SOX3P41225 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.44■□□□□ 0.22
SOX3P41225 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.44■□□□□ 0.22
SOX3P41225 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.44■□□□□ 0.22
SOX3P41225 MIR5100-201ENST00000579544 119 ntBASIC16.44■□□□□ 0.22
SOX3P41225 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.44■□□□□ 0.22
SOX3P41225 AL591684.3-201ENST00000605187 298 ntBASIC16.44■□□□□ 0.22
SOX3P41225 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SOX3P41225 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.44■□□□□ 0.22
SOX3P41225 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.44■□□□□ 0.22
SOX3P41225 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SOX3P41225 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX3P41225 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SOX3P41225 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
SOX3P41225 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.43■□□□□ 0.22
SOX3P41225 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.43■□□□□ 0.22
SOX3P41225 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.43■□□□□ 0.22
SOX3P41225 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.43■□□□□ 0.22
SOX3P41225 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SOX3P41225 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SOX3P41225 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.43■□□□□ 0.22
SOX3P41225 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms