Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRCA1P38398 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRCA1P38398 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 MIR346-201ENST00000362234 95 ntBASIC20.94■□□□□ 0.94
BRCA1P38398 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.94■□□□□ 0.94
BRCA1P38398 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.94■□□□□ 0.94
BRCA1P38398 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
BRCA1P38398 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.94■□□□□ 0.94
BRCA1P38398 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.94■□□□□ 0.94
BRCA1P38398 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.94■□□□□ 0.94
BRCA1P38398 BANF1P1-201ENST00000553684 263 ntBASIC20.94■□□□□ 0.94
BRCA1P38398 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.94■□□□□ 0.94
BRCA1P38398 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.94■□□□□ 0.94
BRCA1P38398 MIR6805-201ENST00000615055 62 ntBASIC20.94■□□□□ 0.94
BRCA1P38398 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRCA1P38398 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.94■□□□□ 0.94
BRCA1P38398 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
BRCA1P38398 AC012569.1-201ENST00000591191 1524 ntBASIC20.93■□□□□ 0.94
BRCA1P38398 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.93■□□□□ 0.94
BRCA1P38398 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.93■□□□□ 0.94
BRCA1P38398 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 DGCR5-201ENST00000399539 862 ntBASIC20.93■□□□□ 0.94
BRCA1P38398 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.93■□□□□ 0.94
BRCA1P38398 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.93■□□□□ 0.94
BRCA1P38398 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
BRCA1P38398 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
BRCA1P38398 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.93■□□□□ 0.94
BRCA1P38398 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.93■□□□□ 0.94
BRCA1P38398 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRCA1P38398 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.92■□□□□ 0.94
BRCA1P38398 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.92■□□□□ 0.94
BRCA1P38398 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.92■□□□□ 0.94
BRCA1P38398 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
BRCA1P38398 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
BRCA1P38398 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.92■□□□□ 0.94
BRCA1P38398 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
BRCA1P38398 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
BRCA1P38398 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.92■□□□□ 0.94
BRCA1P38398 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.92■□□□□ 0.94
BRCA1P38398 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.92■□□□□ 0.94
BRCA1P38398 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.92■□□□□ 0.94
BRCA1P38398 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCA1P38398 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.92■□□□□ 0.94
BRCA1P38398 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.91■□□□□ 0.94
BRCA1P38398 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.91■□□□□ 0.94
BRCA1P38398 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
BRCA1P38398 AL080243.2-201ENST00000418783 582 ntBASIC20.91■□□□□ 0.94
BRCA1P38398 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.91■□□□□ 0.94
BRCA1P38398 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
BRCA1P38398 AC105233.2-201ENST00000523697 349 ntBASIC20.91■□□□□ 0.94
BRCA1P38398 AF228730.5-201ENST00000530288 346 ntBASIC20.91■□□□□ 0.94
BRCA1P38398 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.91■□□□□ 0.94
BRCA1P38398 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.91■□□□□ 0.94
BRCA1P38398 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.91■□□□□ 0.94
BRCA1P38398 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.91■□□□□ 0.94
BRCA1P38398 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.91■□□□□ 0.94
BRCA1P38398 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.91■□□□□ 0.94
BRCA1P38398 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCA1P38398 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.9■□□□□ 0.94
BRCA1P38398 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.9■□□□□ 0.94
BRCA1P38398 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.9■□□□□ 0.94
BRCA1P38398 AC112492.5-201ENST00000421897 457 ntBASIC20.9■□□□□ 0.94
BRCA1P38398 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 SNX29P1-201ENST00000548357 1007 ntBASIC20.9■□□□□ 0.94
BRCA1P38398 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.9■□□□□ 0.94
BRCA1P38398 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
BRCA1P38398 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
BRCA1P38398 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms