Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.07■□□□□ 0.64
CLDN3O15551 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CLDN3O15551 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.07■□□□□ 0.64
CLDN3O15551 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.07■□□□□ 0.64
CLDN3O15551 AC018712.1-201ENST00000455767 687 ntBASIC19.07■□□□□ 0.64
CLDN3O15551 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CLDN3O15551 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.07■□□□□ 0.64
CLDN3O15551 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.07■□□□□ 0.64
CLDN3O15551 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.07■□□□□ 0.64
CLDN3O15551 AL139327.4-201ENST00000612362 153 ntBASIC19.07■□□□□ 0.64
CLDN3O15551 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.07■□□□□ 0.64
CLDN3O15551 AC148477.8-201ENST00000624298 468 ntBASIC19.07■□□□□ 0.64
CLDN3O15551 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CLDN3O15551 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.07■□□□□ 0.64
CLDN3O15551 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CLDN3O15551 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.06■□□□□ 0.64
CLDN3O15551 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.06■□□□□ 0.64
CLDN3O15551 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.06■□□□□ 0.64
CLDN3O15551 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.06■□□□□ 0.64
CLDN3O15551 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.06■□□□□ 0.64
CLDN3O15551 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.06■□□□□ 0.64
CLDN3O15551 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 AC025062.2-201ENST00000605477 670 ntBASIC19.06■□□□□ 0.64
CLDN3O15551 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.06■□□□□ 0.64
CLDN3O15551 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN3O15551 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN3O15551 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.05■□□□□ 0.64
CLDN3O15551 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.05■□□□□ 0.64
CLDN3O15551 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.05■□□□□ 0.64
CLDN3O15551 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN3O15551 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN3O15551 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN3O15551 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN3O15551 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN3O15551 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN3O15551 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN3O15551 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 LYSMD4-203ENST00000378904 2122 ntBASIC19.04■□□□□ 0.64
CLDN3O15551 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.04■□□□□ 0.64
CLDN3O15551 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.04■□□□□ 0.64
CLDN3O15551 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.04■□□□□ 0.64
CLDN3O15551 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
CLDN3O15551 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CLDN3O15551 RPS2P28-201ENST00000314255 741 ntBASIC19.04■□□□□ 0.64
CLDN3O15551 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
CLDN3O15551 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 AL031284.1-201ENST00000419297 478 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms