Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.8■□□□□ 0.28
SLC28A1O00337 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.8■□□□□ 0.28
SLC28A1O00337 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 AC103564.2-201ENST00000432853 1299 ntBASIC16.8■□□□□ 0.28
SLC28A1O00337 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.8■□□□□ 0.28
SLC28A1O00337 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.8■□□□□ 0.28
SLC28A1O00337 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SLC28A1O00337 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.8■□□□□ 0.28
SLC28A1O00337 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SLC28A1O00337 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.8■□□□□ 0.28
SLC28A1O00337 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SLC28A1O00337 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SLC28A1O00337 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
SLC28A1O00337 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SLC28A1O00337 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SLC28A1O00337 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SLC28A1O00337 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SLC28A1O00337 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 AC011840.4-201ENST00000578471 627 ntBASIC16.79■□□□□ 0.28
SLC28A1O00337 AC090616.6-201ENST00000582640 721 ntBASIC16.79■□□□□ 0.28
SLC28A1O00337 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.79■□□□□ 0.28
SLC28A1O00337 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.79■□□□□ 0.28
SLC28A1O00337 AL353801.3-201ENST00000609898 542 ntBASIC16.79■□□□□ 0.28
SLC28A1O00337 AL592071.1-201ENST00000611956 408 ntBASIC16.79■□□□□ 0.28
SLC28A1O00337 IGHV3-41-201ENST00000613121 348 ntBASIC16.79■□□□□ 0.28
SLC28A1O00337 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.79■□□□□ 0.28
SLC28A1O00337 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 AC046185.3-201ENST00000623228 1824 ntBASIC16.79■□□□□ 0.28
SLC28A1O00337 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.79■□□□□ 0.28
SLC28A1O00337 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SLC28A1O00337 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.79■□□□□ 0.28
SLC28A1O00337 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SLC28A1O00337 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SLC28A1O00337 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SLC28A1O00337 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SLC28A1O00337 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SLC28A1O00337 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms