Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 MRPL3P1-201ENST00000400109 1033 ntBASIC17.98■□□□□ 0.47
VPS28Q9UK41 KRT18P67-201ENST00000432816 1264 ntBASIC17.98■□□□□ 0.47
VPS28Q9UK41 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 SART3-203ENST00000546611 1184 ntBASIC17.98■□□□□ 0.47
VPS28Q9UK41 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 SLC25A6P4-201ENST00000586535 553 ntBASIC17.98■□□□□ 0.47
VPS28Q9UK41 AL353593.2-201ENST00000602529 1483 ntBASIC17.98■□□□□ 0.47
VPS28Q9UK41 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS28Q9UK41 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS28Q9UK41 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 RNPS1P1-201ENST00000507437 918 ntBASIC17.97■□□□□ 0.47
VPS28Q9UK41 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 NKAPP1-205ENST00000585790 367 ntBASIC17.97■□□□□ 0.47
VPS28Q9UK41 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VPS28Q9UK41 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.97■□□□□ 0.47
VPS28Q9UK41 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS28Q9UK41 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.96■□□□□ 0.47
VPS28Q9UK41 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 AC002558.1-201ENST00000488906 803 ntBASIC17.96■□□□□ 0.47
VPS28Q9UK41 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 AL773604.1-201ENST00000617417 272 ntBASIC17.96■□□□□ 0.47
VPS28Q9UK41 AC079776.2-201ENST00000641154 1609 ntBASIC17.96■□□□□ 0.47
VPS28Q9UK41 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS28Q9UK41 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.96■□□□□ 0.47
VPS28Q9UK41 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
VPS28Q9UK41 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
VPS28Q9UK41 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS28Q9UK41 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms