Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 AC132938.6-201ENST00000623828 1655 ntBASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 TSPY14P-201ENST00000303979 915 ntBASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 AP006294.2-201ENST00000641667 209 ntBASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CHMP1AQ9HD42 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CHMP1AQ9HD42 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CHMP1AQ9HD42 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CHMP1AQ9HD42 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.08■□□□□ 0.01
CHMP1AQ9HD42 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
CHMP1AQ9HD42 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CHMP1AQ9HD42 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 SEC1P-202ENST00000473944 940 ntBASIC15.08■□□□□ 0
CHMP1AQ9HD42 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 NAPSB-206ENST00000562112 1266 ntBASIC15.08■□□□□ 0
CHMP1AQ9HD42 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.08■□□□□ 0
CHMP1AQ9HD42 GLDC-219ENST00000640208 420 ntTSL 2 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CHMP1AQ9HD42 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.08■□□□□ 0
CHMP1AQ9HD42 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 AC133963.1-201ENST00000504166 1679 ntBASIC15.07■□□□□ 0
CHMP1AQ9HD42 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms