Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL25A1Q9BXS0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
COL25A1Q9BXS0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 AC009336.1-201ENST00000608941 1553 ntBASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 CETN4P-206ENST00000642099 2168 ntBASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 AC123567.1-201ENST00000548294 1261 ntBASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 WFDC1-204ENST00000613603 549 ntBASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL25A1Q9BXS0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 AC104306.2-201ENST00000451877 341 ntBASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 UPF3AP2-201ENST00000457924 1132 ntBASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 AC132938.6-201ENST00000623828 1655 ntBASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 AP3S2-216ENST00000617003 1561 ntBASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.44■□□□□ 0.38
COL25A1Q9BXS0 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 EIF4HP1-201ENST00000453115 687 ntBASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 USP32P1-208ENST00000506594 1164 ntBASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 SPDYE18-201ENST00000510091 1050 ntBASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 AL589739.1-201ENST00000607720 493 ntBASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 AC148477.9-201ENST00000623974 539 ntBASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.43■□□□□ 0.38
COL25A1Q9BXS0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms