Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 LINC01451-201ENST00000623792 534 ntBASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 Z83836.1-201ENST00000624605 1642 ntBASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM56Q9BRZ2 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM56Q9BRZ2 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 HOMER2P1-201ENST00000455653 964 ntBASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 AC010460.3-201ENST00000511359 1579 ntBASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM56Q9BRZ2 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM56Q9BRZ2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TRIM56Q9BRZ2 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
TRIM56Q9BRZ2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM56Q9BRZ2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms