Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 AL512384.1-201ENST00000406683 331 ntBASIC28.53■■■□□ 2.16
IFT140Q96RY7 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
IFT140Q96RY7 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 AC018529.1-201ENST00000613063 361 ntBASIC28.53■■■□□ 2.16
IFT140Q96RY7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
IFT140Q96RY7 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
IFT140Q96RY7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
IFT140Q96RY7 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
IFT140Q96RY7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC28.53■■■□□ 2.16
IFT140Q96RY7 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
IFT140Q96RY7 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 STOM-203ENST00000538954 1257 ntTSL 5 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 NAA38-206ENST00000576384 424 ntTSL 2 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC28.53■■■□□ 2.16
IFT140Q96RY7 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
IFT140Q96RY7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
IFT140Q96RY7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
IFT140Q96RY7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
IFT140Q96RY7 AC112492.5-201ENST00000421897 457 ntBASIC28.52■■■□□ 2.16
IFT140Q96RY7 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 AL353779.1-201ENST00000434793 351 ntBASIC28.52■■■□□ 2.16
IFT140Q96RY7 AC092658.1-201ENST00000505836 891 ntBASIC28.52■■■□□ 2.16
IFT140Q96RY7 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 RAB34-223ENST00000636154 730 ntTSL 2 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
IFT140Q96RY7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
IFT140Q96RY7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
IFT140Q96RY7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC28.52■■■□□ 2.16
IFT140Q96RY7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.16
IFT140Q96RY7 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC28.51■■■□□ 2.16
IFT140Q96RY7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 MTRF1LP2-201ENST00000506027 1122 ntBASIC28.51■■■□□ 2.15
IFT140Q96RY7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 ARL16-202ENST00000570561 768 ntTSL 2 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 TEX28P1-201ENST00000613479 1221 ntBASIC28.51■■■□□ 2.15
IFT140Q96RY7 TEX28P2-201ENST00000617764 1221 ntBASIC28.51■■■□□ 2.15
IFT140Q96RY7 AL033527.4-201ENST00000641026 673 ntBASIC28.51■■■□□ 2.15
IFT140Q96RY7 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC28.51■■■□□ 2.15
IFT140Q96RY7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
IFT140Q96RY7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
IFT140Q96RY7 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 DGCR5-201ENST00000399539 862 ntBASIC28.5■■■□□ 2.15
IFT140Q96RY7 AP006294.1-201ENST00000415407 339 ntBASIC28.5■■■□□ 2.15
IFT140Q96RY7 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 PRR29-204ENST00000577953 565 ntTSL 4 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 RNA5-8SN1-201ENST00000610460 153 ntBASIC28.5■■■□□ 2.15
IFT140Q96RY7 RNA5-8SN5-202ENST00000612463 153 ntBASIC28.5■■■□□ 2.15
IFT140Q96RY7 RNA5-8SN4-201ENST00000613359 153 ntBASIC28.5■■■□□ 2.15
IFT140Q96RY7 RNA5-8SN5-201ENST00000619471 153 ntBASIC28.5■■■□□ 2.15
IFT140Q96RY7 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
IFT140Q96RY7 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC28.5■■■□□ 2.15
IFT140Q96RY7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
IFT140Q96RY7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
IFT140Q96RY7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
IFT140Q96RY7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 MIR658-201ENST00000385210 100 ntBASIC28.49■■■□□ 2.15
IFT140Q96RY7 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms