Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
LINC00477Q96M19 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00477Q96M19 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
LINC00477Q96M19 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC00477Q96M19 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
LINC00477Q96M19 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00477Q96M19 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00477Q96M19 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 AC022211.2-201ENST00000585075 2527 ntBASIC13.11□□□□□ -0.31
LINC00477Q96M19 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 COX5BP2-201ENST00000392354 334 ntBASIC13.11□□□□□ -0.31
LINC00477Q96M19 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 AC113347.1-201ENST00000413321 391 ntBASIC13.11□□□□□ -0.31
LINC00477Q96M19 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 AC092597.1-201ENST00000487352 616 ntBASIC13.11□□□□□ -0.31
LINC00477Q96M19 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 FGF14-AS2-201ENST00000606448 1074 ntBASIC13.11□□□□□ -0.31
LINC00477Q96M19 AC139887.4-201ENST00000607877 719 ntBASIC13.11□□□□□ -0.31
LINC00477Q96M19 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 PKD1P5-201ENST00000532415 10291 ntBASIC13.11□□□□□ -0.31
LINC00477Q96M19 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00477Q96M19 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
LINC00477Q96M19 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 AC116353.5-201ENST00000638148 1699 ntBASIC13.1□□□□□ -0.31
LINC00477Q96M19 RNF152P1-201ENST00000397754 604 ntBASIC13.1□□□□□ -0.31
LINC00477Q96M19 TSPY5P-201ENST00000426936 936 ntBASIC13.1□□□□□ -0.31
LINC00477Q96M19 SAPCD2P2-201ENST00000431719 1174 ntBASIC13.1□□□□□ -0.31
LINC00477Q96M19 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 GXYLT1P3-201ENST00000453058 1193 ntBASIC13.1□□□□□ -0.31
LINC00477Q96M19 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 AC005332.3-201ENST00000589904 676 ntBASIC13.1□□□□□ -0.31
LINC00477Q96M19 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 NKILA-202ENST00000614771 2598 ntBASIC13.1□□□□□ -0.31
LINC00477Q96M19 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00477Q96M19 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00477Q96M19 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms