Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 AC009949.1-201ENST00000623048 1830 ntBASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 SAPCD2P3-201ENST00000455031 850 ntBASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 AP002469.2-201ENST00000531724 424 ntBASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 AL160237.2-201ENST00000556165 472 ntBASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 AP001269.4-201ENST00000609611 512 ntBASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 AC148477.8-201ENST00000624298 468 ntBASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
CHMP4CQ96CF2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4CQ96CF2 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4CQ96CF2 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4CQ96CF2 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4CQ96CF2 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.83■□□□□ 0.92
CHMP4CQ96CF2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4CQ96CF2 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 FAAHP1-202ENST00000446499 1238 ntBASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 AL023806.1-201ENST00000603994 1649 ntBASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4CQ96CF2 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 AC097374.2-201ENST00000618617 1306 ntBASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 AC007967.3-201ENST00000434308 558 ntBASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 AP000347.1-202ENST00000435868 847 ntBASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 AC008608.2-201ENST00000606089 416 ntBASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4CQ96CF2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 INTS4P1-201ENST00000438455 1935 ntBASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms