Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 COX5BP2-201ENST00000392354 334 ntBASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 AC092647.4-201ENST00000457211 535 ntBASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 AC002558.1-201ENST00000488906 803 ntBASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 AC211429.1-201ENST00000415277 523 ntBASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 AC104076.2-201ENST00000448912 469 ntBASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 AC105020.1-201ENST00000435356 2205 ntBASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 PCDHA14-201ENST00000506751 2298 ntBASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ATG4AQ8WYN0 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 AC007967.3-201ENST00000434308 558 ntBASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 AC019129.2-201ENST00000609837 1235 ntBASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.1■□□□□ 0.49
ATG4AQ8WYN0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms